MAS系统

数据库说明

MAS系统使用的数据库主要用于位点和基因的注释,可以基于基因的弹窗和结果表中的注释获得,以下为注释相关的数据库:

数据库名称 目前使用的注释层面 网址
CancerHotspots snpindel http://cancerhotspots.org/#/home
CBMDB snpindel https://www.cancergenomeinterpreter.org/
CIViC snpindel https://civicdb.org/home
clinvar snpindel https://www.ncbi.nlm.nih.gov/clinvar/
cosmic snpindel,sv https://cancer.sanger.ac.uk/cosmic/
dbnsfp snpindel http://varianttools.sourceforge.net/Annotation/DbNSFP
dbscsnv snpindel http://asia.ensembl.org/info/docs/tools/vep/script/vep_plugins.html#plugins_existing
dbsnp snpindel https://www.ncbi.nlm.nih.gov/snp/
DDD sv https://www.ddduk.org/
DGV sv http://dgv.tcag.ca/dgv/app/home
Ensembl_Gene snpindel http://grch37.ensembl.org/index.html
esp6500 snpindel http://evs.gs.washington.edu/EVS/
exac snpindel http://exac.broadinstitute.org/
g1000 snpindel,cnv,sv https://www.internationalgenome.org/
gnomad snpindel http://gnomad.broadinstitute.org/
GO snpindel http://geneontology.org/
HGMD snpindel http://www.hgmd.cf.ac.uk/ac/introduction.php?lang=english
HPO snpindel https://hpo.jax.org/
ICGC snpindel https://icgc.org/
KEGG snpindel https://www.kegg.jp/
OMIM snpindel,sv https://omim.org/
oncoKB snpindel,cnv,sv http://oncokb.org/
refGene snpindel https://www.ncbi.nlm.nih.gov/gene/?term=
snpeff snpindel http://snpeff.sourceforge.net/
TCGA snpindel https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga
TSGene snpindel https://bioinfo.uth.edu/TSGene/index.html

本文由 GCBI学院 作者:乞嘚咙咚呛咚呛 发表,转载请注明来源!

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